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Magnetic Resonance Materials in Physics, Biology and MedicineEcho-dephased steady state free precession Sat, 16 May 2009 05:53:42 -0000
Abstract
Objective To introduce a novel positive contrast method for passive localization and visualization of paramagnetic susceptibility markers.
Materials and methods The novel approach is based on an echo-dephased steady-state free precession (SSFP) sequence. Gradients dephase any signal
by ±π at the centered echo-time (TE = TR/2) and induce a total dephasing of ±2π per pixel within TR. This ensures that background
tissues do not contribute to signal formation and thus appear dark. However, within the close vicinity of the paramagnetic
marker, local gradient fields compensate for the intrinsic dephasing to form an echo. Conceptual issues of gradient compensation
and its visualization characteristics are analyzed. The feasibility of the proposed technique for MR-guided intravascular
interventions is demonstrated using flow phantom.
Results Echo-dephased SSFP is able to localize and visualize paramagnetic marker with excellent suppression of the background signals.
The flow phantom experiments concluded that reliable tracking of the interventional guidewire is feasible using echo-dephased
SSFP.
Conclusion With newly introduced echo-dephased SSFP approach, accurate and reliable visualization of paramagnetic interventional device
is feasible.
Content Type Journal ArticleCategory Research ArticleDOI 10.1007/s10334-009-0173-3Authors
Sunil Patil, University of Basel Hospital Division of Radiological Physics, Department of Medical Radiology Petersgraben 4 4031 Basel SwitzerlandOliver Bieri, University of Basel Hospital Division of Radiological Physics, Department of Medical Radiology Petersgraben 4 4031 Basel SwitzerlandKlaus Scheffler, University of Basel Hospital Division of Radiological Physics, Department of Medical Radiology Petersgraben 4 4031 Basel Switzerland
Journal Magnetic Resonance Materials in Physics, Biology and MedicineOnline ISSN 1352-8661Print ISSN 0968-5243
Monitoring the survival of islet transplants by MRI using a novel technique for their automated detection and quantification Fri, 24 Apr 2009 06:56:02 -0000
Abstract
Object There is a clinical need to be able to assess graft loss of transplanted pancreatic islets (PI) non-invasively with clear-cut
quantification of islet survival. We tracked transplanted PI in diabetic mice during the early post-transplant period by magnetic
resonance imaging (MRI) and quantified the islet loss using automatic segmentation technique.
Materials and methods Magnetically labeled islet iso-, allo- and xenografts were injected into the right liver lobes. Animals underwent MRI scanning
during 14 days after PI transplantation. MR images were processed using custom-made software, which automatically detects
hypointense regions representing PI. It is based on morphological top-hat and bottom-hat transforms.
Results Manually and automatically detected areas, corresponding to PI, differed by 4% in phantoms. Signal loss regions due to PI
decreased comparably in all groups during the first week post transplant. Throughout the second week post-transplant, the
signal loss area continued in a steep decline in case of allografts and xenografts, whereas the decline in case of isografts
slowed down.
Conclusion Automatic segmentation allows for the more reproducible, objective assessment of transplanted PI. Quantification confirms
the assumption that a significant number of islets are destroyed in the first week following transplantation irrespective
of allografts, xenografts or isografts.
Content Type Journal ArticleCategory Research ArticleDOI 10.1007/s10334-009-0172-4Authors
Daniel Jirak, Robarts Research Institute Imaging Research Laboratories London ON N6A 5K8 CanadaJan Kriz, Robarts Research Institute Imaging Research Laboratories London ON N6A 5K8 CanadaMichal Strzelecki, Technical University of Lodz Institute of Electronics Lodz PolandJiabi Yang, Robarts Research Institute Transplantation Group London ON CanadaCraig Hasilo, Robarts Research Institute Transplantation Group London ON CanadaDavid J. White, Robarts Research Institute Transplantation Group London ON CanadaPaula J. Foster, Robarts Research Institute Imaging Research Laboratories London ON N6A 5K8 Canada
Journal Magnetic Resonance Materials in Physics, Biology and MedicineOnline ISSN 1352-8661Print ISSN 0968-5243
Detection and quantification of d-glucuronic acid in human bile using 1H NMR spectroscopy: relevance to the diagnosis of pancreatic cancer Fri, 24 Apr 2009 06:56:02 -0000
Abstract
Objective There are no specific biomarkers available for the definitive diagnosis of pancreatic cancer. Analysis of d-glucuronic acid (GlcUA) in bile could be valuable in this regard.
Materials and methods Bile samples obtained from patients with pancreatic cancer (n = 4), chronic pancreatitis (n = 3) and control patients with biliary obstruction (n = 10) were analyzed by 1H NMR spectroscopy. GlcUA was quantified from the peak area of the α-1CH signal (at 5.24 ppm) obtained by deconvolution.
Results GlcUA was detected in human bile by one-dimensional 1H NMR and two-dimensional 1H–1H COSY and TOCSY experiments. Quantification of GlcUA was achieved by measuring the peak area of the α-1CH signal using CPMG experiment, and the quantities of GlcUA were calibrated to account for the attenuation due to T
2 relaxation. GlcUA was observed at elevated levels in bile samples obtained from pancreatic cancer patients, whereas it was
either absent or found in negligible amounts in control and chronic pancreatitis patients. The reason for the presence of
elevated levels of GlcUA could be the hydrolysis of biliary bilirubin diglucuronide by β-glucuronidase, released excessively from pancreatic tissue during the course of malignancy.
Conclusion Analysis of d-glucuronic acid in bile could be valuable in the detection of pancreatic cancer, and detecting GlcUA by in vivo 1H MRS has the potential to help in the non-invasive diagnosis of pancreatic cancer. Given that only four cancer patients have
been studied so far, the new biomarker is regarded as a preliminary finding, but one that warrants further investigation.
Content Type Journal ArticleCategory Research ArticleDOI 10.1007/s10334-009-0171-5Authors
Tedros Bezabeh, National Research Council Institute for Biodiagnostics 435 Ellice Avenue Winnipeg MB R3B 1Y6 CanadaOmkar B. Ijare, National Research Council Institute for Biodiagnostics 435 Ellice Avenue Winnipeg MB R3B 1Y6 CanadaNils Albiin, CLINTEC, Karolinska Institutet Division of Radiology Stockholm SwedenUrban Arnelo, CLINTEC, Karolinska Institutet Division of Surgery Stockholm SwedenBo Lindberg, CLINTEC, Karolinska Institutet Division of Radiology Stockholm SwedenIan C. P. Smith, National Research Council Institute for Biodiagnostics 435 Ellice Avenue Winnipeg MB R3B 1Y6 Canada
Journal Magnetic Resonance Materials in Physics, Biology and MedicineOnline ISSN 1352-8661Print ISSN 0968-5243
Extraction of the first bolus passage in dynamic susceptibility contrast perfusion measurements Tue, 21 Apr 2009 10:05:53 -0000
Abstract
Object The processing of dynamic susceptibility contrast perfusion measurements requires an extraction of the first bolus passage
of the injected contrast agent. State-of-the-art methods employ the fit of a gamma variate function to the measured data.
The use of a gamma variate function is motivated by its shape similarity to the expected relaxation rate time-course during
the first bolus passage. However, the quality of this result is strongly influenced by the amount of overlap of the first
and second bolus passage. In this work we present an alternative, data-driven method for the extraction of the first bolus
passage from a measured relaxation time-course.
Materials and methods By using prior knowledge of the injection function, the measured time-courses can be transformed to time-courses that would
occur at a shorter injection duration where the two bolus passages have less overlap. This time-course is found by Tikhonov
regularized deconvolution of the measured time-courses with an injection function that bases on the measurement protocol.
A minimum search yields the cut-off point at which the first bolus can be extrapolated to zero. The gamma variate fit is performed
using Powells algorithm. The proposed approach is compared to the gamma variate fit approach using simulations and an exemplary
dataset from one healthy volunteer.
Results The new method performs comparably stable as the gamma variate function fit approach in simulations. Both methods are superior
to a simple exponential extrapolation approach. Applied to volunteer data, the new method performs much faster than the gamma
variate fit approach. The results obtained from both methods correspond well.
Conclusion The new method offers a conceptual understanding of the first bolus passage and yields similar results to the gamma variate
function fit approach but performs much faster.
Content Type Journal ArticleCategory Research ArticleDOI 10.1007/s10334-009-0170-6Authors
Peter Gall, University Medical Center Freiburg Department of Diagnostic Radiology, Medical Physics Hugstetterstrasse 55 79106 Freiburg GermanyIrina Mader, University Medical Center Freiburg Department of Neuroradiology Breisacher Strasse 64 79106 Freiburg GermanyValerij G. Kiselev, University Medical Center Freiburg Department of Diagnostic Radiology, Medical Physics Hugstetterstrasse 55 79106 Freiburg Germany
Journal Magnetic Resonance Materials in Physics, Biology and MedicineOnline ISSN 1352-8661Print ISSN 0968-5243
Fast multiecho balanced SSFP metabolite mapping of 1H and hyperpolarized 13C compounds Wed, 15 Apr 2009 08:04:00 -0000
Abstract
Object To investigate the feasibility of multiecho balanced steady-state free precession (bSSFP)-based fast chemical shift mapping
hyperpolarized 13C metabolites. The overall goal was to reduce total imaging time and to increase spatial resolution compared to common chemical
shift imaging (CSI).
Materials and methods A multiecho bSSFP sequence in combination with an iterative reconstruction algorithm was implemented. 1H experiments were performed on phantoms and on a human volunteer in order to investigate the feasibility of the method on
a system with metabolite maps that are known beforehand. 13C experiments were performed in vivo on pigs, where CSI images were acquired also for comparison.
Results Chemical shift images of three and four distinct 1H resonance frequencies as well as chemical shift images of up to five hyperpolarized 13C metabolites were successfully obtained.
Conclusion Fast metabolite mapping based on multiecho balanced SSFP in combination with an iterative reconstruction approach could successfully
separate several 1H resonances and hyperpolarized 13C metabolites.
Content Type Journal ArticleCategory Research ArticleDOI 10.1007/s10334-009-0169-zAuthors
Jochen Leupold, University Hospital Freiburg Department of Diagnostic Radiology, Medical Physics Freiburg GermanySven Månsson, Lund University, Malmö University Hospital Medical Radiation Physics and Radiology, Department of Clinical Sciences Malmö Malmö SwedenJ. Stefan Petersson, GE Healthcare Helsingborg SwedenJürgen Hennig, University Hospital Freiburg Department of Diagnostic Radiology, Medical Physics Freiburg GermanyOliver Wieben, University of Wisconsin-Madison Departments of Medical Physics and Radiology, Wisconsin Institutes for Medical Research (WIMR) 1111 Highland Ave. Madison WI 53705-2275 USA
Journal Magnetic Resonance Materials in Physics, Biology and MedicineOnline ISSN 1352-8661Print ISSN 0968-5243
Voxel-based reproducibility of T2 relaxation time in patellar cartilage at 1.5 T with a new validated 3D rigid registration algorithm Wed, 01 Apr 2009 05:53:10 -0000
Abstract
Object T2 relaxation time is a promising MRI parameter for the early diagnosis and follow-up of osteoarthritis. Assessing the evolution
of osteoarthritis needs exact comparison of datasets acquired at different times and knowledge of the T2 reproducibility.
The aims of this work were to establish a method for voxel-wise comparison of T2 datasets and to assess voxel-based T2 reproducibility
in healthy patellar cartilage.
Materials and methods A new rigid 3D-registration algorithm was developed. The precision of the registration algorithm was calculated with numerical
simulations and in vitro measurements. In vivo T2 reproducibility was assessed in six volunteers measured at seven different
times. The voxel-based reproducibility was characterized with the coefficient of variation (CV) of T2, and its regional variations
were analyzed.
Results The registration algorithm showed an average registration precision lower than 25% of the voxel size. In vivo voxel-based
T2 reproducibility exhibited a median CV of 10.1%. Reproducibility showed significant regional differences. Largest CVs (15.4%)
were found near the articular surface. The central regions showed the lowest CVs (7.2%) and the lateral regions intermediate
CVs (11.2%).
Conclusion Using a rigid 3D-registration algorithm provides voxel-based T2 reproducibility errors comparable to former, 2D region-based
approaches, thus opening the possibility of voxel-based monitoring of cartilage degradation in osteoarthritis.
Content Type Journal ArticleCategory Research ArticleDOI 10.1007/s10334-009-0168-0Authors
José G. Raya, Ludwig Maximilian University of Munich Josef Lissner Laboratory for Biomedical Imaging, Department of Clinical Radiology, Großhadern Marchioninistr. 15 81377 Munich GermanyAnnie Horng, Ludwig Maximilian University of Munich Department of Clinical Radiology, Großhadern Munich GermanyOlaf Dietrich, Ludwig Maximilian University of Munich Josef Lissner Laboratory for Biomedical Imaging, Department of Clinical Radiology, Großhadern Marchioninistr. 15 81377 Munich GermanyJürgen Weber, Ludwig Maximilian University of Munich Josef Lissner Laboratory for Biomedical Imaging, Department of Clinical Radiology, Großhadern Marchioninistr. 15 81377 Munich GermanyJulia Dinges, Klinikum rechts der Isar der Technischen Universität München Institut für Röntgendiagnostik Munich GermanyElisabeth Mützel, Ludwig Maximilian University of Munich Department of Forensic Medicine Munich GermanyMaximilian F. Reiser, Ludwig Maximilian University of Munich Josef Lissner Laboratory for Biomedical Imaging, Department of Clinical Radiology, Großhadern Marchioninistr. 15 81377 Munich GermanyChristian Glaser, Ludwig Maximilian University of Munich Department of Clinical Radiology, Großhadern Munich Germany
Journal Magnetic Resonance Materials in Physics, Biology and MedicineOnline ISSN 1352-8661Print ISSN 0968-5243
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