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Magnetic Resonance Materials in Physics, Biology and MedicineDiffusion simulation-based fiber tracking using time-of-arrival maps: a comparison with standard methods Sat, 30 Jan 2010 18:13:13 -0000
Abstract
Object We propose a new tracking method based on time-of-arrival (TOA) maps derived from simulated diffusion processes.
Materials and methods The proposed diffusion simulation-based tracking consists of three steps that are successively evaluated on small overlapping
sub-regions in a diffusion tensor field. First, the diffusion process is simulated for several time steps. Second, a TOA map
is created to store simulation results for the individual time steps that are required for the tract reconstruction. Third,
the fiber pathway is reconstructed on the TOA map and concatenated between neighboring sub-regions. This new approach is compared
with probabilistic and streamline tracking. All methods are applied to synthetic phantom data for an easier evaluation of
their fiber reconstruction quality.
Results The comparison of the tracking results did show severe problems for the streamline approach in the reconstruction of crossing
fibers, for example. The probabilistic method was able to resolve the crossing, but could not handle strong curvature. The
new diffusion simulation-based tracking could reconstruct all problematic fiber constellations.
Conclusion The proposed diffusion simulation-based tracking method used the whole tensor information of a neighborhood of voxels and
is, therefore, able to handle problematic tracking situations better than established methods.
Content Type Journal ArticleCategory Research ArticleDOI 10.1007/s10334-009-0195-xAuthors
Sarah C. Mang, University Hospital Section Experimental MR, Department of Neuroradiology Tuebingen GermanyDmitriy Logashenko, Steinbeis-Forschungszentrum 936 Oelbronn-Duerrn GermanyDaniel Gembris, University Mannheim Institute for Computational Medicine Mannheim GermanyGabriel Wittum, Goethe University Goethe Center for Scientific Computing (G-CSC), Simulation and Modelling Frankfurt GermanyWolfgang Grodd, University Hospital Section Experimental MR, Department of Neuroradiology Tuebingen GermanyUwe Klose, University Hospital Section Experimental MR, Department of Neuroradiology Tuebingen Germany
Journal Magnetic Resonance Materials in Physics, Biology and MedicineOnline ISSN 1352-8661Print ISSN 0968-5243
Present and future of simultaneous EEG-fMRI Mon, 25 Jan 2010 16:59:15 -0000
Abstract The brain’s activity can be measured in numerous complementary ways, including electroencephalography (EEG) and functional
magnetic resonance imaging (fMRI). The simultaneous acquisition of EEG and fMRI was originally developed to make the localization
of the generators of often subtle pathological activity commonly observed in EEG recordings of patients with epilepsy more
sensitive and spatially accurate by mapping their hemodynamic correlates. Now, the value of the information provided by simultaneous
EEG-fMRI is being evaluated in a clinical context, while in parallel, more sophisticated data analysis techniques, e.g. with
electrical source imaging or dynamic causal modeling, have begun to be applied to increase the technique’s sensitivity and
allow the study of brain network structure. Beyond its clinically oriented application in epilepsy, simultaneous EEG-fMRI
recording has now gained interest as a tool for basic and systems human neuroscience, e.g. the study of neuro-vascular coupling
and cognitive studies. In this review, we give an overview over the current use of simultaneous EEG-fMRI, its applications
to the study of epilepsy as well as human cognition and systems neuroscience and ongoing and anticipated methodological developments.
Content Type Journal ArticleCategory Review ArticleDOI 10.1007/s10334-009-0196-9Authors
Karin Rosenkranz, UCL Institute of Neurology Department of Clinical and Experimental Epilepsy 33 Queen Square London WC1N 3BG UKLouis Lemieux, UCL Institute of Neurology Department of Clinical and Experimental Epilepsy 33 Queen Square London WC1N 3BG UK
Journal Magnetic Resonance Materials in Physics, Biology and MedicineOnline ISSN 1352-8661Print ISSN 0968-5243
Detection of vascular alterations by in vivo magnetic resonance angiography and histology in APP/PS1 mouse model of Alzheimer’s disease Tue, 12 Jan 2010 06:45:06 -0000
Abstract
Object The brain of patients with Alzheimer’s disease (AD) is characterized by the presence of amyloid plaques and neurofibrillary
tangles. Vascular alterations such as amyloid angiopathy are also commonly reported in patients with AD and participate in
mechanisms involved in disease onset and progression. Transgenic mouse models of AD have been engineered to evaluate the pathophysiology
and new treatments of the disease. Our study evaluated vascular alterations in APPSweLon/PS1M146L mouse model of AD.
Materials and methods Histological analysis and in vivo magnetic resonance angiography protocols based on time of flight (TOF) and contrast-enhanced
(CE) angiography were applied to evaluate cerebrovascular alterations.
Results Histological analysis showed that cerebrovascular amyloid deposition starts by the same time as extracellular amyloid plaques.
However, unlike plaques deposition, severity of cerebrovascular alterations is stabilized in older animals. Alteration of
the middle cerebral artery was detected in old APPSweLon/PS1M146L mice with respect to adult ones by evaluating the severity of vessel voids and the reduction of vessel length on TOF- and
CE-angiograms. Age-related alterations in control PS1 mice were only detected as a reduced vessel length on CE-angiograms.
Conclusion These results show that macroscopic vascular abnormalities are part of the pathological alterations developed by APPSweLon/PS1M146L mouse models of AD.
Content Type Journal ArticleCategory Research ArticleDOI 10.1007/s10334-009-0194-yAuthors
Nadine El Tannir El Tayara, Institut Curie, Centre de Recherche Orsay FranceBenoît Delatour, CNRS UMR 8620, Laboratoire NAMC Orsay FranceAndreas Volk, Institut Curie, Centre de Recherche Orsay FranceMarc Dhenain, Institut Curie, Centre de Recherche Orsay France
Journal Magnetic Resonance Materials in Physics, Biology and MedicineOnline ISSN 1352-8661Print ISSN 0968-5243
Journal Volume Volume 23
Journal Issue Volume 23, Number 1 / February, 2010
Grid-free interactive and automated data processing for MR chemical shift imaging data Tue, 05 Jan 2010 17:00:06 -0000
Abstract
Purpose Today’s available chemical shift imaging (CSI) analysis tools are based on Fourier transform of the entire data set prior
to interactive display. This strategy is associated with limitations particularly when arbitrary voxel positions within a
3D spatial volume are needed by the user. In this work, we propose and demonstrate a processing-resource-efficient alternative
strategy for both interactive and automated CSI data processing up to three spatial dimensions.
Methods This approach uses real-time voxel-shift by first-order phase manipulation as a basis and therefore allows grid-free voxel
positioning within the 3D volume. The corresponding spectrum is extracted from the 4D data (3D spatial/1D spectral) at each
time a voxel position is selected. The spatial response function and hence the exact voxel size and shape are calculated in
parallel including the same processing parameters. Using this mechanism sequentially along with AMARES time-domain modeling,
we also implemented automated quantitative and B
0-insensitive metabolite mapping.
Results Metabolite maps of N-acetyl aspartate, choline and creatine were generated using 1H-CSI data from the brain of healthy volunteers and patients with tumor and epilepsy. 31P-3D-CSI of the heart of a healthy volunteer is also shown.
Conclusion The calculated metabolite maps demonstrate good stability and accuracy of the algorithm in all situations tested. The suggested
algorithm constitutes therefore an attractive alternative to existing CSI processing strategies.
Content Type Journal ArticleCategory Research ArticleDOI 10.1007/s10334-009-0186-yAuthors
Yann Le Fur, Université de la Méditerranée Centre de Résonance Magnétique Biologique et Médicale (CRMBM), UMR CNRS No 6612, Faculté de Médecine de Marseille 27 Bd Jean Moulin 13385 Marseille Cedex 5 FranceFrançois Nicoli, Université de la Méditerranée Centre de Résonance Magnétique Biologique et Médicale (CRMBM), UMR CNRS No 6612, Faculté de Médecine de Marseille 27 Bd Jean Moulin 13385 Marseille Cedex 5 FranceMaxime Guye, Université de la Méditerranée Centre de Résonance Magnétique Biologique et Médicale (CRMBM), UMR CNRS No 6612, Faculté de Médecine de Marseille 27 Bd Jean Moulin 13385 Marseille Cedex 5 FranceSylviane Confort-Gouny, Université de la Méditerranée Centre de Résonance Magnétique Biologique et Médicale (CRMBM), UMR CNRS No 6612, Faculté de Médecine de Marseille 27 Bd Jean Moulin 13385 Marseille Cedex 5 FrancePatrick J. Cozzone, Université de la Méditerranée Centre de Résonance Magnétique Biologique et Médicale (CRMBM), UMR CNRS No 6612, Faculté de Médecine de Marseille 27 Bd Jean Moulin 13385 Marseille Cedex 5 FranceFrank Kober, Université de la Méditerranée Centre de Résonance Magnétique Biologique et Médicale (CRMBM), UMR CNRS No 6612, Faculté de Médecine de Marseille 27 Bd Jean Moulin 13385 Marseille Cedex 5 France
Journal Magnetic Resonance Materials in Physics, Biology and MedicineOnline ISSN 1352-8661Print ISSN 0968-5243
Journal Volume Volume 23
Journal Issue Volume 23, Number 1 / February, 2010
Small field of view imaging using wavelet encoding with 2 dimensional RF pulses and gradient echo: phantom results Sat, 19 Dec 2009 06:50:22 -0000
Abstract
Object The objective of this work is to propose an imaging sequence based upon the wavelet encoding approach to provide MRI images
free from folding artifacts, in the small field of view (FOV) regime, such as dynamic magnetic resonance imaging (MRI) studies.
Materials and methods The method consists of using a 2D spatially selective RF excitation pulse inserted into a gradient- echo pulse sequence to
excite spins within a determined plane where wavelet encoding is achieved in one direction and slice selection is performed
in the second direction. Wavelet encoding allows for spatially localized excitation and consequently restricts the spins excited
within a reduced FOV. It consists of varying, according to a predetermined scheme, the width and position of the profile of
the so-called fast RF pulse of the 2D RF excitation pulse, to obey wavelet encoding translation and dilation conditions. This
sequence is implemented on a 3 Tesla whole body Siemens scanner.
Results Compared to Fourier encoding, the proposed technique tested on phantoms with different shapes and structures, is able to provide
gradient-echo reduced FOV images free from aliased signals.
Conclusion Wavelet encoding is suitable for small FOV imaging in dynamic MRI studies.
Content Type Journal ArticleCategory Research ArticleDOI 10.1007/s10334-009-0193-zAuthors
Hacene Serrai, National Research Council of Canada, Institute for Biodiagnostics 435 Ellice Avenue Winnipeg MB R3X 2C6 CanadaRichard Young, National Research Council of Canada, Institute for Biodiagnostics 435 Ellice Avenue Winnipeg MB R3X 2C6 Canada
Journal Magnetic Resonance Materials in Physics, Biology and MedicineOnline ISSN 1352-8661Print ISSN 0968-5243
Journal Volume Volume 23
Journal Issue Volume 23, Number 1 / February, 2010
Combining RF encoding with parallel imaging: a simulation study Sat, 19 Dec 2009 06:50:20 -0000
Abstract
Object The aim of this work was to investigate combining spatial encoding by radio frequency (RF) excitation with conventional parallel
imaging (PI) methods to determine whether this could improve overall imaging performance.
Materials and methods A simulation framework was developed to predict imaging performance for regular, central and random under-sampled parallel
imaging methods augmented by RF spatial signal modulation. Optimisation methods were used to find the RF modulation patterns
that produce optimal image reconstruction using the condition number of the PI encoding matrix as a quality metric. The diverse
patterns of raw data sampling produced were compared using a measure of data uniformity across k-space.
Results Regular under-sampling of k-space provided the best reconstruction quality. When other under-sampling schemes were employed
then RF modulation could be used to improve reconstruction, with the optimum achieved by redistributing the signal in k-space
to return to regular sub-sampling. For all tested under-sampling patterns, no further improvements in image quality were attained.
Conclusion Using the simulation framework and metrics described the interaction of different spatial encoding approaches could be investigated.
Regular sub-sampling provided optimal reconstruction, independent of whether the spatial encoding was achieved by gradients
only or a combination of gradient and RF.
Content Type Journal ArticleCategory Research ArticleDOI 10.1007/s10334-009-0191-1Authors
Rita G. Nunes, Hammersmith Campus, Imperial College Robert Steiner MR Unit, Imaging Sciences Department Du Cane Road London W12 0NN UKJoseph V. Hajnal, Hammersmith Campus, Imperial College Robert Steiner MR Unit, Imaging Sciences Department Du Cane Road London W12 0NN UKDavid J. Larkman, Hammersmith Campus, Imperial College Robert Steiner MR Unit, Imaging Sciences Department Du Cane Road London W12 0NN UK
Journal Magnetic Resonance Materials in Physics, Biology and MedicineOnline ISSN 1352-8661Print ISSN 0968-5243
Journal Volume Volume 23
Journal Issue Volume 23, Number 1 / February, 2010
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