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Plants are a major group of living things including familiar organisms such as trees, flowers, herbs, ferns and mosses. About 350,000 species of plants, defined as seed plants, bryophytes, ferns and fern allies, have been estimated to exist. As of 2004, some 287,655 species had been identified, of which 258,650 are flowering and 15,000 bryophytes.

Aristotle divided all living things between plants, which generally do not move, and animals. In Linnaeus' system, these became the Kingdoms Vegetabilia (later Plantae) and Animalia. Since then, it has become clear that the Plantae as originally defined included several unrelated groups, and the fungi and several groups of algae were removed to new kingdoms. However, these are still often considered plants in many contexts. Indeed, any attempt to match "plant" with a single taxon is doomed to fail, because plant is a vaguely defined concept unrelated to the presumed phylogenic concepts on which modern taxonomy is based.

Embryophytes


Main article: Embryophytes
Most familiar are the multicellular land plants, called embryophytes. They include the vascular plants, plants with full systems of leaves, stems, and roots. They also include a few of their close relatives, often called bryophytes, of which mosses and liverworts are the most common.

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Human Molecular Genetics - current issue

Beyond the sarcomere: CSRP3 mutations cause hypertrophic cardiomyopathy
Geier, C., Gehmlich, K., Ehler, E., Hassfeld, S., Perrot, A., Hayess, K., Cardim, N., Wenzel, K., Erdmann, B., Krackhardt, F., Posch, M. G., Bublak, A., Nagele, H., Scheffold, T., Dietz, R., Chien, K. R., Spuler, S., Furst, D. O., Nurnberg, P., Ozcelik, C. Tue, 26 Aug 2008 00:00:00 -0000
Hypertrophic cardiomyopathy (HCM) is a frequent genetic cardiac disease and the most common cause of sudden cardiac death in young individuals. Most of the currently known HCM disease genes encode sarcomeric proteins. Previous studies have shown an association between CSRP3 missense mutations and either dilated cardiomyopathy (DCM) or HCM, but all these studies were unable to provide comprehensive genetic evidence for a causative role of CSRP3 mutations. We used linkage analysis and identified a CSRP3 missense mutation in a large German family affected by HCM. We confirmed CSRP3 as an HCM disease gene. Furthermore, CSRP3 missense mutations segregating with HCM were identified in four other families. We used a newly designed monoclonal antibody to show that muscle LIM protein (MLP), the protein encoded by CSRP3, is mainly a cytosolic component of cardiomyocytes and not tightly anchored to sarcomeric structures. Our functional data from both in vitro and in vivo analyses suggest that at least one of MLP’s mutated forms seems to be destabilized in the heart of HCM patients harbouring a CSRP3 missense mutation. We also present evidence for mild skeletal muscle disease in affected persons. Our results support the view that HCM is not exclusively a sarcomeric disease and also suggest that impaired mechano-sensory stress signalling might be involved in the pathogenesis of HCM.
PTHR1 mutations associated with Ollier disease result in receptor loss of function
Couvineau, A., Wouters, V., Bertrand, G., Rouyer, C., Gerard, B., Boon, L. M., Grandchamp, B., Vikkula, M., Silve, C. Tue, 26 Aug 2008 00:00:00 -0000
PTHR1-signaling pathway is critical for the regulation of endochondral ossification. Thus, abnormalities in genes belonging to this pathway could potentially participate in the pathogenesis of Ollier disease/Maffucci syndrome, two developmental disorders defined by the presence of multiple enchondromas. In agreement, a functionally deleterious mutation in PTHR1 (p.R150C) was identified in enchondromas from two of six unrelated patients with enchondromatosis. However, neither the p.R150C mutation (26 tumors) nor any other mutation in the PTHR1 gene (11 patients) could be identified in another study. To further define the role of PTHR1-signaling pathway in Ollier disease and Maffucci syndrome, we analyzed the coding sequences of four genes (PTHR1, IHH, PTHrP and GNAS1) in leucocyte and/or tumor DNA from 61 and 23 patients affected with Ollier disease or Maffucci syndrome, respectively. We identified three previously undescribed missense mutations in PTHR1 in patients with Ollier disease at the heterozygous state. Two mutations (p.G121E, p.A122T) were present only in enchondromas, and one (p.R255H) in both enchondroma and leukocyte DNA. Assessment of receptor function demonstrated that these three mutations impair PTHR1 function by reducing either the affinity of the receptor for PTH or the receptor expression at the cell surface. These mutations were not found in DNA from 222 controls. Including our data, PTHR1 functionally deleterious mutations have now been identified in five out 31 enchondromas from Ollier patients. These findings provide further support for the idea that heterozygous mutations in PTHR1 that impair receptor function participate in the pathogenesis of Ollier disease in some patients.
Hypomethylation of subtelomeric regions in ICF syndrome is associated with abnormally short telomeres and enhanced transcription from telomeric regions
Yehezkel, S., Segev, Y., Viegas-Pequignot, E., Skorecki, K., Selig, S. Tue, 26 Aug 2008 00:00:00 -0000
Telomeres and adjacent subtelomeric regions are packaged as heterochromatin in many organisms. The heterochromatic features include DNA methylation, histones H3-Lys9 (Lysine 9) and H4-Lys20 (Lysine 20) methylation and heterochromatin protein1 alpha binding. Subtelomeric DNA is hypomethylated in human sperm and ova, and these regions are subjected to de novo methylation during development. In mice this activity is carried out by DNA methyltransferase 3b (Dnmt3b). Mutations in DNMT3B in humans lead to the autosomal-recessive ICF (immunodeficiency, centromeric region instability, facial anomalies) syndrome. Here we show that, in addition to several satellite and non-satellite repeats, the subtelomeric regions in lymphoblastoid and fibroblast cells of ICF patients are also hypomethylated to similar levels as in sperm. Furthermore, the telomeres are abnormally short in both the telomerase-positive and -negative cells, and many chromosome ends lack detectable telomere fluorescence in situ hybridization signals from either one or both sister-chromatids. In contrast to Dnmt3a/b–/– mouse embryonic stem cells, increased telomere sister-chromatid exchange was not observed in ICF cells. Hypomethylation of subtelomeric regions was associated in the ICF cells with advanced telomere replication timing and elevated levels of transcripts emanating from telomeric regions, known as TERRA (telomeric-repeat-containing RNA) or TelRNA. The current findings provide a mechanistic explanation for the abnormal telomeric phenotype observed in ICF syndrome and highlights the link between TERRA/TelRNA and structural telomeric integrity.

 
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Plant Genome Data and Information Center - Provides access to a variety of information, products and services on a range of plant and animal genome mapping. From the National Agricultural Library of the US Department of Agriculture.

C-Fern - A Plant For Teaching and Research - Educational materials for teaching plant biology using hands-on and inquiry-based investigations and independent student-initiated research. Uses the tropical homosporous fern genus Ceratopteris as a model plant system.
Meta Description: [ C-Fern, a specially derived strain of a tropical homosporous fern offers a dynamic approach to teaching plant biology using hands-on and inquiry-based investigations and independent student-initiated research. ]

Centre for Genetic Resources, The Netherlands (CGN) - Provides information on research and protocols and crop collections including European and international reference collections of Brassica and Lettuce. Includes a searchable database.

Cerealsdb - Cereal functional genomics at the University of Bristol. Bioinformatics tools for wheat and maize research including digital differential display, BLAST, electronic Northern blots and microarray analysis.
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404 Computational Biology Centers - Provides information on research projects, including the EST projects and management, and software development.

DNA LandMarks, Inc. - Develop molecular plant breeding tools.Research includes molecular mapping, map-based cloning, and DNA markers.

500 Donach Plant Breeding Academy - Education, comment and research in plant breeding based on natural genetics, including quantitative population genetics.

Genoplante - Joint programme in plant genomics, in which public institutes and private firms are implicated. Provides an informative and educational resource on crop improvement and genomic studies.
Meta Description: [ présentation du programme de recherche de génomique végétale génoplante et de la société génoplante-valor : activité et projets de recherche en cours, acteurs, collaborations nationales et européennes, résultats, valorisation et contacts utiles. ]

Institute for Plant Genomics and Biotechnology - Develop plant biotechnology, genomics, and related life science technologies for crop improvement . Includes research data, development laboratories, and staff profiles.

International Plant Genetic Resources Institute - Seeks to advance the conservation and use of genetic diversity. Site includes maintenance and conservation of genetic resources of crops, forestry and related species, regional programs, networks, links, and information on events and training programs.
Meta Description: [ IPGRI International Plant Genetic Resources Institute is the world's largest international non-profit agricultural research and training organization devoted solely to the conservation and promotion of agricultural biodiversity. Site includes both popular and technical information about genetic r... ]

Lam Laboratory - Project to chart the relative physical position and movement of sequences for each of the chromosomes in cells of living plants. Includes project plan, 3d map, technology, and references.

Nordic Gene Bank - A plant genetic resources centre for Nordic agriculture and horticulture. Includes a database for searching for cultivars or accessions stored for specific taxa and a library containing information on the institutes publications.

Photosynthetic Mutant Library - Library of transposon induced maize mutants, DNA samples, and phenotypic data, available for the study of chloroplast biogenesis. Includes user guidelines, protocols, and controls.
Meta Description: [ Photosynthetic Mutant Library (PML). PML is a library of transposon induced maize mutants, DNA samples, and phenotypic data, available for the study of chloroplast biogenesis. ]

PLACE - Database of motifs found in plant cis-acting regulatory DNA elements in vascular plants and their variations in other genes or in other plant species are also compiled.

500 Plant Breeding - North Carolina State University - Offers a range of information on research programs, courses, and crops. Includes facilities, history, meetings, and photographs.

Plant Gene Expression Center - Conducts fundamental research in plant molecular biology. Includes an overview of research, facilities, seminars, links, and directions.

500 Plant Gene Register - An electronic publication for articles describing the isolation and DNA sequence determination of plant genes.

Plant Genome Data and Information Center - Resource site, from the National Agricultural Library of the US Department of Agriculture . Includes publications and related links.

Plant Genome Mapping Laboratory at the University of Georgia - Identify and implement DNA diagnostic tools that are predictive of specific plant characteristics, and identify genes that are responsible for plant development, evolution, or agriculture.

Plant Genomics at Cirad - Aimed at assisting breeding programs. Features molecular analysis of genetic diversity, genome mapping, somatic embryogenesis, and genetic transformation.

Plant Molecular Biology Center - Promotes, coordinates, and facilitates research activities in plant molecular and cellular biology. Includes information on the Core DNA sequencing facility. From Northern Illinois University .

Plant Molecular Biology Lab at Penn State - Basic and applied research in plant biotechnology and molecular biology by Mark Guiltinan.
Meta Description: [ The Guiltinan lab at Penn State University perfoms research in plant molecular biology primarily with cacao and maize. ]

Plant Patent - Provide information about protecting new variety and trademarks. Information is also available about license agreements and how to enforce patents and trademark rights.
Meta Description: [ PlantPatent.com can provide information about protecting your new variety and your trademarks. Information is also available about license agreements and how to enforce your patent and trademark rights, if necessary. ]

The Chlamydomonas Genetics Center - Duke University - Serves as a central repository to receive, catalogue, preserve and distribute cultures of wild type and mutant strains of the green alga Chlamydomonas reinhardtii. Also provides an extensive database and user support network.

The System-Wide Information Network for Genetic Resources - SINGER - International Agricultural Research Centres of the Consultative Group on International Agricultural Research . Provides access to information on the collections of genetic resources held by the CGIAR centres.

The UK Crop BioInformatics Network - Individual databases for Arabidopsis, Barley, Brassica, Forage grasses, Millet and comparative analysis . Also develops new tools and displays to highlight the agronomic significance of comparative analysis.
Meta Description: [ UK CropNet is a network of five UK academic groups that develop software tools and databases relating to plant genomic data ]

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Official music video for Big Log by Robert Plant. Available on the Robert Plant Nine Lives Box Set DVD with 19 other ...
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