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The structure of a thing is how the parts of it relate to each other, how it is "put together". This contrasts with process, which is how the thing works; but process requires a viable structure.

Both reality and language have structure. One of the goals of general semantics, and of science, is to create and use language the structure of which accurately parallels the structure of reality.

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What are the best data structure and/or introductory algorithms text books? Other than, Knuth, CLR, Aho, Sedgewick, We: http://bit.ly/6BjUw
ribbions420 (lisa) Sat, 07 Nov 2009 03:35:44 -0000
What are the best data structure and/or introductory algorithms text books? Other than, Knuth, CLR, Aho, Sedgewick, We: http://bit.ly/6BjUw
phpBB forum structure (btree) crashed badly (mySQL tables still ok). Found a fix that saved time: http://bit.ly/nAFh4 #phpBB
Lars_Schenk (Lars Schenk) Sat, 07 Nov 2009 03:34:42 -0000
phpBB forum structure (btree) crashed badly (mySQL tables still ok). Found a fix that saved time: http://bit.ly/nAFh4 #phpBB
RT @TEDNews: CK Prahalad: In large organizations, break down the existing power structure if you want to learn. #TEDIndia
Kevindoylejones (Kevindoylejones) Sat, 07 Nov 2009 03:34:21 -0000
RT @TEDNews: CK Prahalad: In large organizations, break down the existing power structure if you want to learn. #TEDIndia
@nzben that looks like a sound structure
ShotbyRobins (Gareth Robins) Sat, 07 Nov 2009 03:34:15 -0000
@nzben that looks like a sound structure
CK - how do we change - break down hierarchical power structure becos pple hc access to information and can challenge each other #tedindia
dina (Dina Mehta) Sat, 07 Nov 2009 03:33:26 -0000
CK - how do we change - break down hierarchical power structure becos pple hc access to information and can challenge each other #tedindia
CK Prahalad: In large organizations, break down the existing power structure if you want to learn. #TEDIndia
TEDNews (TED News) Sat, 07 Nov 2009 03:33:01 -0000
CK Prahalad: In large organizations, break down the existing power structure if you want to learn. #TEDIndia

 
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Atlas of Protein Side-Chain Interactions - Modeling the packing of all 20 amino acid side-chains with one-another and with DNA - from Birkbeck and University Colleges, London.

500 CAMPASS - Protein alignments organised as a database of over 5000 protein domains organized into structural superfamilies, including references maintained by the Department of Biochemistry, University of Cambridge, UK.

Chromatin Structure and Function - Information regarding histones, histone modifications and their biological roles, and related links.

Glucocorticoid and Nuclear Receptor Resource - Collection of individual databases on members of the steroid and thyroid hormone and their receptors from Georgetown University, Washington, DC.

Histone Acetyltransferase - Provides a database of proteins that acetylate histones, including links to active researchers in the field and related links.

Histone Sequence Database - Compendium of histone protein sequence alignments, including postranslational modifications and proteins containing the histone fold, at the National Human Genome Research Institute, Bethesda, MD.

Hydrogen Exchange Mass Spectrometry - Analysis of proteins and protein dynamics with hydrogen exchange and mass spectrometry from Corrales, NM.
Meta Description: [ Hydrogen Exchange / Mass Spectrometry -- Homepage ]

InBase - Overview of protein splicing, exteins and the intein database at New England Biolabs, Inc. Includes links to publications at the NCBI, National Library of Medicine, Maryland.

Macromolecular Structure Database - Resource for the deposition and validation of newly proposed structures, maintained by research group, within the European Bioinformatics Institute, Hinxton, UK.
Meta Description: [ msd, Macromolecular Structure Database Group ]

500 Map - An attempt to classify all proteins from SWISSPROT and TrEMBL into groups of related proteins.

Metalloprotein Database and Browser - Resources for coordination patterns, and estimating distance between metal and ligand at binding sites. Includes search and visualization interfaces, maintained by the Scripps Research Institute, La Jolla, CA.
Meta Description: [ An structural database of metal-binding sites in metalloproteins, including an interactive search and visualization interface. ]

NetNglyc - N-glycosylation site prediction in human proteins using artificial neural networks that examine the sequence context of Asn-Xaa-Ser/Thr sequons, from Center for Biological Sequence Analysis, Technical University of Denmark.

NetOGlyc 3.1 Server - Produces neural network predictions of mucin type GalNAc O-glycosylation sites in mammalian glycoproteins. Maintained at the Center for Biological Sequence Analysis, Technical University of Denmark.

NIGMS: Protein Structure Initiative - PSI is a federal, university, and industry effort aiming to reduce the costs and time taken to determine a 3D topology. Includes details of funding and featured publications from Bethesda, Maryland.
Meta Description: [ An initiative to accelerate the determination of protein structures, with the ultimate goal of using experimentally determined structures to deduce the structures of related proteins based on their genetic sequences. ]

Peptide Peptidomimetic Informatics - Devoted to the modeling of polypeptide structures, aiming to bridge the gap from organic to biochemistry for undergraduates at the University of Pittsburgh, Bradford, PA.

Principles of Protein Structure - Archive of online course, with discussion lists, and summary of lecture notes from 1996 at Birkbeck, University of London, UK.

Protein Data Bank - PDB provides a text based format for archiving experimentally-determined, three dimensional structures, at the Brookhaven National Laboratory, with list of mirror sites worldwide.

Protein Design - News and discussion in the area of folding, synthesis, and tertiary topology prediction, run by David Yee from Paramount, CA.
Meta Description: [ Protein Folding ]

Protein Kinase Resource - Functional and structural information, based on protein sequence, with link to nomenclature for the signaling cascade genes, maintained at the San Diego Supercomputer Center, CA.

Protein Structure and Function (Petsko and Ringe) - 3 parts (Prediction of secondary structure, Membrane protein structure and Protein motifs) of chapter 1 (From Sequence to Structure) can be read for free
Meta Description: [ Protein Structure and Function is an introduction for postgenomic biologists to the structural basis for the biological activities of proteins, including folding and stability, the different classes of fold, and the prediction of function from structure ]

Protein Structure Initiative - Large scale attempt to determine topology, through collaborative internet based effort, maintained by Millennium Information, Inc., Cambridge, MA.

Protein Structure Prediction Center - Advances and archive of meetings on critical assessment of 3D determination from sequence using alignment tools. Maintained at Lawrence Livermore National Laboratory, California.

Proteins Under Pressure - Research to provide insights leading to novel engineering and biotechnology applications at Rensselaer Polytechnic Institute, Troy, NY.
Meta Description: [ Campus.News is up-to-the minute electronic news for the Rensselaer Polytechnic Institute Community. Published weekly or as breaking news warrants, it contains research news, faculty, staff, and student accomplishments, and campus events. ]

ProWeb Project - Summarizes features of protein families, documentation to capture biological richness through links to home pages of workers in the field from FHCRC, Seattle, WA.

500 Rainey, Dr. Jan K. - Publications and tips for dihedral angle calculation, bioinformatics data and scripts for collagen and amino acid side-chain predictions, work using atomic force microscopy, solid and solution state NMR, from Edmonton, Canada.

500 Structural Classification of Proteins - A key for different proteins based on structural features, with keyword search and PDB data, and an entry viewer for download.

Topology of Protein Structure - Provides articles and FAQ explaining cartoon depictions, atlas of tertiary arrangements of polypeptides within predicted crystal. Includes server for upload of PDB code, and software downloads from University of Leeds, UK.

Tyrosine Residues in Different Proteins - EPR spectrum of a tyrosyl radical provides information about rotational angle of phenoxyl ring. Database compiled to identify the responsible locus, maintained at the University of Essex, Colchester, England.
Meta Description: [ EPR spectrum of a tyrosyl radical in a protein provides information about rotational angle of phenoxyl ring in the radical. This database can be used to identify tyrosine residues in the protein with such rotation angle therefore allowing assignment of the radical to a particular site on the prot... ]

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